Hi Nick,
There are no special characters (that I'm aware of) in the folder names.
Yes, there was more info on the error, i pasted below:
At 12:54:
Failed attempting to create a temporary file in the folder Z:\paulovich\Apollo_2016_17Q014\Experiments\CITN_plasma_pilot\CITN13_RawData with the following error:
Win32 Error: 2
System.IO.IOException: Failed attempting to create a temporary file in the folder Z:\paulovich\Apollo_2016_17Q014\Experiments\CITN_plasma_pilot\CITN13_RawData with the following error:
Win32 Error: 2
at pwiz.Skyline.Util.FileStreamManager.GetTempFileName(String basePath, String prefix, UInt32 unique) in C:\proj\pwiz_x64\pwiz_tools\Skyline\Util\UtilIO.cs:line 786
at pwiz.Skyline.Model.Results.ChromCacheWriter..ctor(String cachePath, ILoadMonitor loader, IProgressStatus status, Action`2 completed) in C:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheWriter.cs:line 55
at pwiz.Skyline.Model.Results.ChromCacheBuilder..ctor(SrmDocument document, ChromatogramCache cacheRecalc, String cachePath, MsDataFileUri msDataFilePath, ILoadMonitor loader, IProgressStatus status, Action`2 complete) in C:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 62
at pwiz.Skyline.Model.Results.ChromatogramCache.Build(SrmDocument document, String documentFilePath, ChromatogramCache cacheRecalc, String cachePath, MsDataFileUri msDataFileUri, IProgressStatus status, ILoadMonitor loader, Action`2 complete) in C:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromatogramCache.cs:line 618 |