Skyline (64-bit) 4.2.0.19072
Oracle VM VirtualBox 6.0
Windows 7 Ultimate SP1
2GB allocated RAM, 2 processors
Hi, this is my first time posting, so please excuse me for any mistakes.
I run skyline on a PC emulator on my macbook. I had left a skyline document open, but "saved the machine state" in Virtual box and quit the program. The next morning, upon opening Virtual Box and the saved machine state an error popped up when I began using Skyline. Unfortunately I didn't save the error, but continued to use it and finished the analysis. I then saved the analysis and closed Skyline, but upon trying to re-open the saved skyline document, I am unable to open my document and the following error:
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Skyline
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Failure opening Z:\190417_Transition List All_load_all_sys_suit_trimmed.sky.
Exception has been thrown by the target of an invocation.
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OK More Info
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System.Reflection.TargetInvocationException: Exception has been thrown by the target of an invocation. ---> System.Reflection.TargetInvocationException: Exception has been thrown by the target of an invocation. ---> pwiz.Skyline.Util.AssumptionException: Audit log is corrupted. Audit log entry time stamps and indices should be decreasing
at pwiz.Skyline.Util.Assume.Fail(String error) in C:\proj\skyline_4_2_x64\pwiz_tools\Skyline\Util\Util.cs:line 1918
at pwiz.Skyline.Util.Assume.IsTrue(Boolean condition, String error) in C:\proj\skyline_4_2_x64\pwiz_tools\Skyline\Util\Util.cs:line 1877
at pwiz.Skyline.Model.AuditLog.AuditLogList.Validate() in C:\proj\skyline_4_2_x64\pwiz_tools\Skyline\Model\AuditLog\AuditLogEntry.cs:line 122
at pwiz.Skyline.Model.AuditLog.AuditLogList.ReadXml(XmlReader reader) in C:\proj\skyline_4_2_x64\pwiz_tools\Skyline\Model\AuditLog\AuditLogEntry.cs:line 109
at pwiz.Skyline.Util.XmlUtil.Deserialize[TObj](XmlReader reader, TObj objNew) in C:\proj\skyline_4_2_x64\pwiz_tools\Skyline\Util\Xml.cs:line 868
at pwiz.Skyline.Model.AuditLog.AuditLogList.Deserialize(XmlReader reader) in C:\proj\skyline_4_2_x64\pwiz_tools\Skyline\Model\AuditLog\AuditLogEntry.cs:line 78
--- End of inner exception stack trace ---
at System.RuntimeMethodHandle.InvokeMethod(Object target, Object[] arguments, Signature sig, Boolean constructor)
at System.Reflection.RuntimeMethodInfo.UnsafeInvokeInternal(Object obj, Object[] parameters, Object[] arguments)
at System.Reflection.RuntimeMethodInfo.Invoke(Object obj, BindingFlags invokeAttr, Binder binder, Object[] parameters, CultureInfo culture)
at System.RuntimeType.InvokeMember(String name, BindingFlags bindingFlags, Binder binder, Object target, Object[] providedArgs, ParameterModifier[] modifiers, CultureInfo culture, String[] namedParams)
at System.Type.InvokeMember(String name, BindingFlags invokeAttr, Binder binder, Object target, Object[] args, CultureInfo culture)
at pwiz.Skyline.Util.XmlElementHelper`1.Deserialize(XmlReader reader) in C:\proj\skyline_4_2_x64\pwiz_tools\Skyline\Util\Xml.cs:line 1121
at pwiz.Skyline.Util.XmlUtil.DeserializeElement[TObj](XmlReader reader, Enum name) in C:\proj\skyline_4_2_x64\pwiz_tools\Skyline\Util\Xml.cs:line 885
at pwiz.Skyline.Util.XmlUtil.DeserializeElement[TObj](XmlReader reader) in C:\proj\skyline_4_2_x64\pwiz_tools\Skyline\Util\Xml.cs:line 875
at pwiz.Skyline.Model.AuditLog.AuditLogList.ReadFromFile(String fileName, String& documentHash) in C:\proj\skyline_4_2_x64\pwiz_tools\Skyline\Model\AuditLog\AuditLogEntry.cs:line 190
at pwiz.Skyline.Model.SrmDocument.ReadAuditLog(String documentPath, String expectedHash, Func`2 getDefaultEntry) in C:\proj\skyline_4_2_x64\pwiz_tools\Skyline\Model\SrmDocument.cs:line 2056
at pwiz.Skyline.SkylineWindow.<>c__DisplayClass925_0.<OpenFile>b__0(IProgressMonitor progressMonitor) in C:\proj\skyline_4_2_x64\pwiz_tools\Skyline\SkylineFiles.cs:line 305
at pwiz.Skyline.Util.ProgressWaitBroker.PerformWork(ILongWaitBroker broker) in C:\proj\skyline_4_2_x64\pwiz_tools\Skyline\Util\UtilUI.cs:line 123
at pwiz.Skyline.Controls.LongWaitDlg.RunWork(Action`1 performWork) in C:\proj\skyline_4_2_x64\pwiz_tools\Skyline\Controls\LongWaitDlg.cs:line 232
--- End of inner exception stack trace ---
at pwiz.Skyline.Util.Helpers.WrapAndThrowException(Exception x) in C:\proj\skyline_4_2_x64\pwiz_tools\Skyline\Util\Util.cs:line 1854
at pwiz.Skyline.Controls.LongWaitDlg.PerformWork(Control parent, Int32 delayMillis, Action`1 performWork) in C:\proj\skyline_4_2_x64\pwiz_tools\Skyline\Controls\LongWaitDlg.cs:line 180
at pwiz.Skyline.Controls.LongWaitDlg.PerformWork(Control parent, Int32 delayMillis, Action`1 performWork) in C:\proj\skyline_4_2_x64\pwiz_tools\Skyline\Controls\LongWaitDlg.cs:line 132
at pwiz.Skyline.SkylineWindow.OpenFile(String path, FormEx parentWindow) in C:\proj\skyline_4_2_x64\pwiz_tools\Skyline\SkylineFiles.cs:line 295
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Does anyone know if I can salvage this document? Earlier saved versions of the skyline document (saved before the initial error appeared after shutting down VirtualBox), appear to be unaffected.
Thank you for any help. |