Dear Skyline Users,
I have just released what I really hope is the final patch to Skyline 4.1 (version 4.1.0.18169) with the following changes:

• Reverted the product name from "Skyline-daily" back to just "Skyline"
• Fixed a bug where libraries were disregarding modifications when returning retention times (reported by Matt, thanks to Nick)
• Fixed matching spectra in SCIEX Midas data to precursors with modifications, especially heavy labeled (reported by Cathy, thanks to Nick)
• Fixed Peptide Settings for Waters Sonar data (reported by Roy)

Most of these got fixed a while ago but were lost when our project transitioned to a new source control system.

If you are already using Skyline 4.1, Skyline should ask to upgrade the next time you restart or use Help > Check for Updates.

Thanks for the quick issue reports. Sorry for the extra confusion around the last patch.

--Brendan