UPGRADE!!

I have just released Skyline 3.5.0.9319 with all relevant fixes we have made since releasing Skyline 3.5:

• Fix ability to use a UI language (English, Chinese or Japanese) other than the current system language
• Fix clicking on labels in multi-peptide graphs (e.g. when proteins are selected in Targets view)
• Fix iRT issues where iRT standards appear more than once in the document
• Accept heavy/light/etc labels in a small molecule transition list without any formulas
• Fix performance importing chromatograms from data on Chorus
• Fix for importing data from Sciex QTRAP 4500
• Fix to use Explicit Retention Time values in peak picking, especially for small molecules
• Fix excessive percent complete output from command-line interface in parallel operations
• Fixes to assay library import generated with Sciex tools
• Fix cases where popup windows come up on wrong monitor when using multiple monitors
• Fix for most common unexpected error "An item with the same key has already been added." in "LoadLibrary"
• Fix problem where "ratio to standard" would be NaN if any of the heavy transitions had zero peak area
• Fix case where progress form came up behind Peptide Settings form during long Peptide Settings changes

https://skyline.gs.washington.edu/labkey/project/home/software/Skyline/begin.view

If Skyline does not offer to update automatically after you restart twice. If you experience issues with a manual installation, please consult the help page on dealing with a broken installation:

https://skyline.gs.washington.edu/labkey/wiki/home/software/Skyline/page.view?name=tip_recover_install

We encourage you to upgrade from earlier releases. Over 60% of all Skyline instances started are now Skyline 3.5. Especially with this patch release, we are now very confident that Skyline 3.5 is a major upgrade from prior releases.

Enjoy.

--Brendan